Tutorials

Download the Jupyter notebooks and follow along with your own SimNIBS data.

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Available Notebooks

1. BIDS Integration Tutorial

How to use simnibs-reader with BIDS-formatted datasets.

Download simnibs-bids-tutorial.ipynb

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2. SNR Optimization Tutorial

Optimize signal-to-noise ratio in your e-field analysis pipeline.

Download snr-optimization-tutorial.ipynb

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3. SNR Simulation Tutorial

Simulate and evaluate SNR across stimulation configurations.

Download snr-simulation-tutorial.ipynb

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Running the notebooks

pip install simnibs-reader jupyterlab nibabel nilearn
jupyter lab

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Folder Types

Folder	Contents
m2m_<subject>/	Head model, segmentation labels, MRI preps
simulation/	Per-condition e-field NIfTI outputs
optimization/	Optimized field maps and electrode configs

Note — SimNIBS-BIDS structure (under consideration) A BIDS-inspired naming convention for multi-subject / multi-condition experiments is being evaluated. The hierarchy electrodes → currents → conductivities follows SimNIBS data structures and will be formalized in a future release.